Detailed Package Description

Detailed Package Description

11/06/2020 Uncategorized 0

General information

  • Full name: %FullName%
  • Model description: %Description%
  • Package web link: %Web.link%
  • Citation(s): %Citation%
  • Developer name(s): %Developers%
  • Organisation(s): %Organization%
  • Model type: %Type%
  • Level of expertise required: %Expertise%
  • Peer reviewed: %Peer.reviewed%
  • Programming language: %Programming.language%
  • GUI: %GUI%
  • R Package: %R.package%
  • Training available: %Training%
  • Package status: %Package status%
  • Further comments: %Comment%

Key model architecture

  • Single or multi-species: %Single.multiple.spp%
  • Multi-species technical interactions: %Multi.species.technical.interactions%
  • Temporal resolution: %Temporal.resolution%
  • Sex structured: %Sex.structure%
  • Growth platoons: %Growth.platoons%
  • Tagging data: %Tagging%
  • Area structure: %Area.structure%
  • Spatial resolution: %Spatial.resolution%
  • Stock structure: %Stock.structure%
  • Selectivity model: %Logistic%; Double normal -%Double.normal%; Spline-%Spline.1%; Parameter for each age/nonparametric -%Parameter.for.each.age.nonparametric%; Other -%Other.21%
  • Seasonality: %Seasonal%
  • Estimation approach: Maximum likelihood -%Maximum.likelihood%; Bayesian – %Bayesian%; Random effects/State-space -%Random.effects.state.space%

Main input data

Catch

  • Catch: %Catch%
  • Retained: %Retained%
  • Discarded: %Discarded%

Composition data

  • Length composition: %Length.composition%
  • Age composition: %Age.composition%
  • Weight composition: %Weight.composition%
  • Conditional age-at-length: %Conditional.age.at.length%
  • Mean weight-at-age: %Mean.weight.at.age%
  • Mean length-at-age: %Mean.length.at.age%
  • Sex: %Sex%
  • Morph composition: %Morph.composition%
  • Ageing error: %Aging.error%
  • Custom composition bin size: %Custom.composition.bin.size%
  • Stock origin: %Stock.origin%
  • Other composition data: %Other.3%

Indices

  • Index of abundance: %Index.of.abundance%
  • Index of effort: %Index.of.effort%
  • Index of fishing mortality: %Fishing.mortality%
  • Absolute index of abundance: %Absolute.estimate.of.abundance%
  • Environment index: %Environmental.index..of.a.parameter.random.effect.%
  • Other index: %Other.4%

Tagging

  • Mark recapture data: %Mark.recapture..to.estimate.movement.and.or.F.or.B.%
  • Growth increment: %Growth.increment%
  • Close kin: %Close.kin%
  • Gene tagging: %Gene.tagging..Maybe.some.special.requirements.%
  • Other tagging: %Other.5%

Projections and reference points calculations

Reference points

  • MSY: %MSY%
  • FMSY: %FMSY%
  • SPRx: %SPRx%
  • Spawning biomass per recruit: %Spawning.biomass.per.recruit%
  • Biomass target: %Biomass.target%
  • Dynamic B0: %Dynamic.B0%

Projections

  • Random deviates: %Random.deviates%
  • Normal approximation: %Normal.approximation%
  • Parameter uncertainty: %Parameter.uncertainty%
  • Fishery impact plots: %Fishery.impact.plots%
  • Other: %Other.29%

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